PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g001930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BBR-BPC
Protein Properties Length: 288aa    MW: 31944.4 Da    PI: 10.2869
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g001930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind359.18.9e-11012871301
       GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllal 84 
                     mdddg+  rn+gyyepa a++k nlglqlms+i + ++k+    re+nl ++++++++++r+      m++    +++++      ++dnk++++
  Csa06g001930.1   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DGNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------PKDNKFFNM 81 
                     99**99..9*******999**************.8999999********.************998888888....*****......********* PP

       GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                     l++++      p++++v+s+t+  +s+q+ +++ ++ s +e +  +     + e+ +++ k++k++ +  +++ pk+kk +k+k+     ++ v+
  Csa06g001930.1  82 LPIST------PNYSNVMSETSGSNSMQMRHQSVVTTSRFEETPIQPPPPREDETVQPSGKKRKMRGSITTPTAPKAKKPRKPKE-----ESGVT 165
                     **766......99****************99988888888744444444444444555556666666666666666666666666.....34455 PP

       GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                     ++ +++r+k +kks+d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa+
  Csa06g001930.1 166 NNVQQQRVKPPKKSVDVVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKLAT 260
                     55556889*************************************************************************************** PP

       GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                     eGy+++n++DLk+hWA+HGtnkfvtir
  Csa06g001930.1 261 EGYSFGNAIDLKSHWARHGTNKFVTIR 287
                     **************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1691287IPR010409GAGA-binding transcriptional activator
PfamPF062178.9E-1021287IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDGNTKPFLP GRESNLMIGS NGSYHPREHE  60
ASMPMNYSWI NQPKDNKFFN MLPISTPNYS NVMSETSGSN SMQMRHQSVV TTSRFEETPI  120
QPPPPREDET VQPSGKKRKM RGSITTPTAP KAKKPRKPKE ESGVTNNVQQ QRVKPPKKSV  180
DVVINGVSMD ISGLPVPVCT CTGTPQQCYR WGCGGWQSAC CTTNISMYPL PMSTKRRGAR  240
ISGRKMSQGA FKKVLEKLAT EGYSFGNAID LKSHWARHGT NKFVTIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545890.0AC254589.1 Capsella rubella clone CAP16-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513937.10.0PREDICTED: protein BASIC PENTACYSTEINE1-like isoform X2
RefseqXP_010513935.10.0PREDICTED: protein BASIC PENTACYSTEINE1-like isoform X1
RefseqXP_010513934.10.0PREDICTED: protein BASIC PENTACYSTEINE1-like isoform X1
SwissprotQ9SKD01e-180BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLR0HH840.0R0HH84_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__107__AT2G01930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-170basic pentacysteine1